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Uniform Manifold Approximation and Projection

Installation

About

Uniform manifold approximation and projection is a technique for dimension reduction. The algorithm was described by McInnes and Healy (2018) in . This package provides an interface for two implementations. One is written from scratch, including components for nearest-neighbor search and for embedding. The second implementation is a wrapper for 'python' package 'umap-learn' (requires separate installation, see vignette for more details).

github.com/tkonopka/umap
Bug report File report

Key Metrics

Version 0.2.10.0
R ≥ 3.6.0
Published 2023-02-01 453 days ago
Needs compilation? yes
License MIT
License File
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Maintainer

Maintainer

Tomasz Konopka

tokonopka@gmail.com

Authors

Tomasz Konopka

aut / cre

Material

Reference manual
Package source

Vignettes

Uniform Manifold Approximation and Projection in R
Interfacing with 'umap-learn'

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

umap archive

Depends

R ≥ 3.6.0

Imports

Matrix
methods
openssl
reticulate
Rcpp ≥ 0.12.6
RSpectra
stats

Suggests

knitr
rmarkdown
testthat

LinkingTo

Rcpp

Reverse Depends

KODAMA

Reverse Imports

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chameleon
ChromSCape
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FateID
GEOexplorer
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Mercator
musclesyneRgies
RaceID
RCSL
regioneReloaded
rrvgo
RSDA
scDataviz
SPIAT
sRACIPE
tomoda

Reverse Suggests

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