CRAN/E | EmbedSOM

EmbedSOM

Fast Embedding Guided by Self-Organizing Map

Installation

About

Provides a smooth mapping of multidimensional points into low-dimensional space defined by a self-organizing map. Designed to work with 'FlowSOM' and flow-cytometry use-cases. See Kratochvil et al. (2019) doi:10.12688/f1000research.21642.1.

Citation EmbedSOM citation info
github.com/exaexa/EmbedSOM

Key Metrics

Version 2.1.2
R ≥ 3.2
Published 2022-07-05 667 days ago
Needs compilation? yes
License GPL (≥ 3)
CRAN checks EmbedSOM results

Downloads

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Last 7 days 105 +11%
Last 30 days 349 +16%
Last 90 days 882 -14%
Last 365 days 3.643 -26%

Maintainer

Maintainer

Mirek Kratochvil

exa.exa@gmail.com

Authors

Mirek Kratochvil

aut / cre

Sofie Van Gassen

cph

Britt Callebaut

cph

Yvan Saeys

cph

Ron Wehrens

cph

Material

README
Reference manual
Package source

Vignettes

EmbedSOM basic embedding

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

EmbedSOM archive

Depends

R ≥ 3.2

Imports

FNN
ggplot2
igraph
Matrix
Rtsne
umap
uwot

Suggests

knitr
rmarkdown