CRAN/E | seriation

seriation

Infrastructure for Ordering Objects Using Seriation

Installation

About

Infrastructure for ordering objects with an implementation of several seriation/sequencing/ordination techniques to reorder matrices, dissimilarity matrices, and dendrograms. Also provides (optimally) reordered heatmaps, color images and clustering visualizations like dissimilarity plots, and visual assessment of cluster tendency plots (VAT and iVAT). Hahsler et al (2008) doi:10.18637/jss.v025.i03.

Citation seriation citation info
github.com/mhahsler/seriation
Copyright The code in src/bea.f is Copyright (C) 1991 F. Murtagh; src/bbwrcg.f, src/arsa.f and src/bburcg.f are Copyright (C) 2005 M. Brusco, H.F. Koehn, and S. Stahl. All other code is Copyright (C) Michael Hahsler, Christian Buchta, and Kurt Hornik.
Bug report File report

Key Metrics

Version 1.5.5
R ≥ 2.14.0
Published 2024-04-17 3 days ago
Needs compilation? yes
License GPL-3
CRAN checks seriation results

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Maintainer

Maintainer

Michael Hahsler

mhahsler@lyle.smu.edu

Authors

Michael Hahsler

aut / cre / cph

Christian Buchta

aut / cph

Kurt Hornik

aut / cph

David Barnett

ctb

Michael Brusco

ctb / cph

Michael Friendly

ctb

Hans-Friedrich Koehn

ctb / cph

Fionn Murtagh

ctb / cph

Stephanie Stahl

ctb / cph

Material

README
NEWS
Reference manual
Package source

In Views

Cluster

Vignettes

An Introduction to the R package seriation

Classification ACM

G.1.6
G.2.1
G.4

macOS

r-prerel

arm64

r-release

arm64

r-oldrel

arm64

r-prerel

x86_64

r-release

x86_64

Windows

r-prerel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

seriation archive

Depends

R ≥ 2.14.0

Imports

ca
cluster
colorspace
foreach
gclus
grDevices
grid
MASS
qap
registry
stats
TSP
vegan

Suggests

dbscan
DendSer
dendextend
doParallel
GA
ggplot2
keras
Rtsne
scales
smacof
tensorflow
testthat
umap

Reverse Depends

adepro
ClusteredMutations
DendSer
elaborator
NetSAM

Reverse Imports

arulesViz
baizer
corrr
HarmonizR
heatmaply
MEDseq
methylscaper
pergola
RMaCzek
sechm
treeheatr

Reverse Suggests

ChemoSpec
corrgram
corrplot
dendextend
dendsort
disclapmix
flexclust
ggraph
ockc
protti
SFS
tidygraph
vcdExtra

Reverse Enhances

relations