CRAN/E | Platypus

Platypus

Single-Cell Immune Repertoire and Gene Expression Analysis

Installation

About

We present 'Platypus', an open-source software platform providing a user-friendly interface to investigate B-cell receptor and T-cell receptor repertoires from scSeq experiments. 'Platypus' provides a framework to automate and ease the analysis of single-cell immune repertoires while also incorporating transcriptional information involving unsupervised clustering, gene expression and gene ontology (Yermanos A, et al (2021) doi:10.1093/nargab/lqab023).

Key Metrics

Version 3.4.1
R ≥ 3.5.0
Published 2022-08-15 592 days ago
Needs compilation? no
License GPL-2
CRAN checks Platypus results

Downloads

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Maintainer

Maintainer

Alexander Yermanos

ayermanos@gmail.com

Authors

Alexander Yermanos

aut / cre

Andreas Agrafiotis

ctb

Raphael Kuhn

ctb

Danielle Shlesinger

ctb

Jiami Han

ctb

Tudor-Stefan Cotet

ctb

Victor Kreiner

ctb

Material

README
NEWS
Reference manual
Package source

Additional repos

vickreiner.github.io/drat/

Vignettes

PlatypusV3 AgedCNS vignette

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

Platypus archive

Depends

R ≥ 3.5.0

Imports

BiocGenerics
Biostrings
cowplot
dplyr
ggplot2
ggtree
jsonlite
Matrix ≥ 1.3-3
doParallel
foreach
plyr
reshape2
seqinr
stringr
Seurat
SeuratObject
tibble
tidyr
utils
useful

Suggests

AnnotationDbi
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bigstatsr
bio3d
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biomaRt
caret
circlize
colorspace
data.table
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fda.usc
fgsea
ggalluvial
ggpubr
ggrepel
ggridges
ggseqlogo
graphkernels
graphlayouts
grid
gridExtra
harmony
igraph
iNEXT
IRanges
limma
keras
kmer
knitr
magrittr
Matrix.utils
methods
monocle3
msigdbr
naivebayes
org.Hs.eg.db
org.Mm.eg.db
Peptides
phangorn
pheatmap
phytools
pROC
ProjecTILs
protr
purrr
r3dmol
randomForest
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