CRAN/E | rxode2

rxode2

Facilities for Simulating from ODE-Based Models

Installation

About

Facilities for running simulations from ordinary differential equation ('ODE') models, such as pharmacometrics and other compartmental models. A compilation manager translates the ODE model into C, compiles it, and dynamically loads the object code into R for improved computational efficiency. An event table object facilitates the specification of complex dosing regimens (optional) and sampling schedules. NB: The use of this package requires both C and Fortran compilers, for details on their use with R please see Section 6.3, Appendix A, and Appendix D in the "R Administration and Installation" manual. Also the code is mostly released under GPL. The 'VODE' and 'LSODA' are in the public domain. The information is available in the inst/COPYRIGHTS.

Citation rxode2 citation info
nlmixr2.github.io/rxode2/
github.com/nlmixr2/rxode2/
Copyright see file COPYRIGHTS
Bug report File report

Key Metrics

Version 2.1.2
R ≥ 4.0.0
Published 2024-01-30 87 days ago
Needs compilation? yes
License GPL (≥ 3)
CRAN checks rxode2 results
Language en-US

Downloads

Yesterday 66 0%
Last 7 days 425 -20%
Last 30 days 2.112 -9%
Last 90 days 6.725 +2%
Last 365 days 23.930 +89%

Maintainer

Maintainer

Matthew L. Fidler

matthew.fidler@gmail.com

Authors

Matthew L. Fidler

aut / cre

Melissa Hallow

aut

Wenping Wang

aut

Zufar Mulyukov

ctb

Alan Hindmarsh

ctb

Arun Srinivasan

ctb

Awad H. Al-Mohy

ctb

Cleve Moler

ctb

Drew Schmidt

ctb

Ernst Hairer

ctb

Gerhard Wanner

ctb

Gilbert Stewart

ctb

Hadley Wickham

ctb

Jack Dongarra

ctb

Jim Bunch

ctb

Linda Petzold

ctb

Martin Maechler

ctb

Matt Dowle

ctb

Matteo Fasiolo

ctb

Nicholas J. Higham

ctb

Roger B. Sidje

ctb

Simon Frost

ctb

Yu Feng

ctb

Bill Denney

ctb

Material

README
NEWS
Reference manual
Package source

In Views

DifferentialEquations
HighPerformanceComputing
MixedModels
Pharmacokinetics

Vignettes

rxode2 ODE solving syntax

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

rxode2 archive

Depends

R ≥ 4.0.0

Imports

PreciseSums ≥ 0.3
Rcpp ≥ 0.12.3
backports
cli ≥2.0.0
checkmate
ggplot2 ≥ 3.4.0
inline
lotri ≥0.4.0
magrittr
memoise
methods
rex
sys
tools
utils
rxode2ll ≥ 2.0.9
rxode2et ≥ 2.0.9
rxode2parse
>2.0.16
rxode2random
> 2.0.11
data.table ≥ 1.12.4
qs

Suggests

Matrix
DT
covr
crayon
curl
digest
dplyr ≥ 0.8.0
ggrepel
gridExtra
htmltools
knitr
learnr
microbenchmark
nlme
remotes
rlang
rmarkdown
scales
shiny
stringi
symengine
testthat
tidyr
usethis
vdiffr ≥ 1.0
withr
xgxr
pillar
tibble
units ≥ 0.6-0
rsconnect
devtools
patchwork
nlmixr2data
lifecycle
kableExtra

LinkingTo

rxode2parse ≥ 2.0.12
rxode2random
PreciseSums ≥ 0.3
Rcpp
RcppArmadillo ≥ 0.9.300.2.0
BH

Reverse Imports

babelmixr2
nlmixr2
nlmixr2est
nlmixr2extra
nlmixr2lib
nlmixr2plot
nlmixr2rpt
nonmem2rx
posologyr

Reverse Suggests

campsis
ggPMX
ruminate

Reverse LinkingTo

babelmixr2
nlmixr2est