CRAN/E | MiscMetabar

MiscMetabar

Miscellaneous Functions for Metabarcoding Analysis

Installation

About

Facilitate the description, transformation, exploration, and reproducibility of metabarcoding analyses. 'MiscMetabar' is mainly built on top of the 'phyloseq', 'dada2' and 'targets' R packages. It helps to build reproducible and robust bioinformatics pipelines in R. 'MiscMetabar' makes ecological analysis of alpha and beta-diversity easier, more reproducible and more powerful by integrating a large number of tools. Important features are described in Taudière A. (2023) doi:10.21105/joss.06038.

github.com/adrientaudiere/MiscMetabar
adrientaudiere.github.io/MiscMetabar/
Bug report File report

Key Metrics

Version 0.7.10
R ≥ 3.5.0
Published 2024-03-08 50 days ago
Needs compilation? no
License AGPL-3
CRAN checks MiscMetabar results
Language en-US

Downloads

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Maintainer

Maintainer

Adrien Taudière

adrien.taudiere@zaclys.net

Authors

Adrien Taudière

aut / cre / cph

Material

README
NEWS
Reference manual
Package source

Vignettes

Introduction

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

MiscMetabar archive

Depends

R ≥ 3.5.0
phyloseq
ggplot2 ≥ 3.5.0
dada2
dplyr

Imports

ape
lifecycle
rlang
stats

Suggests

adespatial
ANCOMBC
BiocManager
Biostrings
circlize
ComplexUpset
DECIPHER
DESeq2
devtools
DT
edgeR
gghalves
ggh4x
ggstatsplot
ggridges
ggVennDiagram
gtsummary
grDevices
grid
gridExtra
here
httr
iNEXT
indicspecies
jsonlite
knitr
magrittr
metacoder
methods
mia
mixtools
multcompView
networkD3
pak
patchwork
permute
phangorn
phyloseqGraphTest
pbapply
plotly
plyr
purrr
reshape2
rmarkdown
rotl
Rtsne
scales
seqinr
SRS
stringr
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