CRAN/E | metacoder

metacoder

Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data

Installation

About

A set of tools for parsing, manipulating, and graphing data classified by a hierarchy (e.g. a taxonomy).

Citation metacoder citation info
grunwaldlab.github.io/metacoder_documentation/
Bug report File report

Key Metrics

Version 0.3.7
R ≥ 3.0.2
Published 2024-02-20 37 days ago
Needs compilation? yes
License GPL-2
License GPL-3
CRAN checks metacoder results

Downloads

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Maintainer

Maintainer

Zachary Foster

zacharyfoster1989@gmail.com

Authors

Zachary Foster

aut / cre

Niklaus Grunwald

ths

Rob Gilmore

ctb

Material

README
NEWS
Reference manual
Package source

In Views

Phylogenetics

Vignettes

Documentation for metacoder

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

metacoder archive

Depends

R ≥ 3.0.2

Imports

stringr
ggplot2
igraph
grid
taxize
seqinr
RCurl
ape
stats
grDevices
utils
lazyeval
dplyr
magrittr
readr
rlang
ggfittext
vegan
cowplot
GA
Rcpp
crayon
tibble
R6

Suggests

knitr
rmarkdown
testthat
zlibbioc
BiocManager
phyloseq
phylotate
traits
biomformat
DESeq2

LinkingTo

Rcpp

Reverse Suggests

MiscMetabar