CRAN/E | seqinr

seqinr

Biological Sequences Retrieval and Analysis

Installation

About

Exploratory data analysis and data visualization for biological sequence (DNA and protein) data. Seqinr includes utilities for sequence data management under the ACNUC system described in Gouy, M. et al. (1984) Nucleic Acids Res. 12:121-127 doi:10.1093/nar/12.1Part1.121.

Citation seqinr citation info
seqinr.r-forge.r-project.org/
github.com/lbbe-software/seqinr
System requirements zlib headers and library.
Bug report File report

Key Metrics

Version 4.2-36
R ≥ 2.10.0
Published 2023-12-08 140 days ago
Needs compilation? yes
License GPL-2
License GPL-3
CRAN checks seqinr results

Downloads

Yesterday 681 0%
Last 7 days 3.898 -25%
Last 30 days 33.478 +53%
Last 90 days 73.626 +29%
Last 365 days 235.941 +3%

Maintainer

Maintainer

Simon Penel

simon.penel@univ-lyon1.fr

Authors

Delphine Charif

aut

Olivier Clerc

ctb

Carolin Frank

ctb

Jean R. Lobry

aut / cph

Anamaria Necşulea

ctb

Leonor Palmeira

ctb

Simon Penel

cre

Guy Perrière

ctb

Material

NEWS
Reference manual
Package source

In Views

Omics

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

seqinr archive

Depends

R ≥ 2.10.0

Imports

ade4
segmented

Reverse Depends

Autoplotprotein
comradesOO
DCODE
EnsCat
GeneGA
LSPFP
MethTargetedNGS
plotprotein
sangeranalyseR
SMM
specL

Reverse Imports

adegenet
agvgd
alakazam
aLFQ
AllelicImbalance
AmyloGram
AnnotationBustR
appreci8R
artMS
beautier
CellBarcode
circRNAprofiler
cleanUpdTSeq
copyseparator
CovidMutations
CRISPRseek
deepredeff
drimmR
effectR
EnvNJ
EpiSemble
evobiR
GB5mcPred
gkmSVM
gquad
HextractoR
hoardeR
IMMAN
insect
IntEREst
ips
itol.toolkit
LncFinder
MAGNAMWAR
metaCluster
metacoder
methylscaper
MSA2dist
netmhc2pan
openPrimeR
prozor
ptm
PTXQC
RHybridFinder
shazam
signalHsmm
sitePath
smmR
sscu
surfaltr
Load all 54 items
(warning: might lead to performance issues and take some time)

Reverse Suggests

autonomics
biomartr
ChIPpeakAnno
cubfits
dartR
dartR.base
disprose
file2meco
idpr
midasHLA
MiRaGE
MMAPPR2data
msa
phangorn
ProteoDisco
RScelestial
tidysq
vhica

Reverse Enhances

spgs