CRAN/E | phyloseqGraphTest

phyloseqGraphTest

Graph-Based Permutation Tests for Microbiome Data

Installation

About

Provides functions for graph-based multiple-sample testing and visualization of microbiome data, in particular data stored in 'phyloseq' objects. The tests are based on those described in Friedman and Rafsky (1979) , and the tests are described in more detail in Callahan et al. (2016) doi:10.12688/f1000research.8986.1.

github.com/jfukuyama/phyloseqGraphTest

Key Metrics

Version 0.1.1
R ≥ 3.5.0
Published 2024-02-05 86 days ago
Needs compilation? no
License CC0
CRAN checks phyloseqGraphTest results

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Maintainer

Maintainer

Julia Fukuyama

julia.fukuyama@gmail.com

Authors

Julia Fukuyama

aut / cre

Material

Reference manual
Package source

Vignettes

Graph Testing Vignette

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

phyloseqGraphTest archive

Depends

R ≥ 3.5.0
ggplot2 ≥ 2.2.1
phyloseq ≥ 1.24.0

Imports

ggnetwork ≥ 0.5.1
igraph ≥ 1.1.2

Suggests

knitr
rmarkdown