CRAN/E | pirouette

pirouette

Create a Bayesian Posterior from a Phylogeny

Installation

About

Theoretical biologists are interested in measuring the extent at which we can measure the truth. This package allows to create a Bayesian posterior from a phylogeny that depicts the true evolutionary relationships. The given and true phylogeny can than be compared to the posterior phylogenies. Richèl J. C. Bilderbeek, Giovanni Laudanno, Rampal S. Etienne (2020) "Quantifying the impact of an inference model in Bayesian phylogenetics" doi:10.1111/2041-210X.13514.

Citation pirouette citation info
github.com/richelbilderbeek/pirouette/
System requirements BEAST2 (https://www.beast2.org/)
Bug report File report

Key Metrics

Version 1.6.9
Published 2023-10-07 203 days ago
Needs compilation? no
License GPL-3
CRAN checks pirouette results

Downloads

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Maintainer

Maintainer

Richèl J.C. Bilderbeek

richel@richelbilderbeek.nl

Authors

Richèl J.C. Bilderbeek

aut / cre

Giovanni Laudanno

aut

Thijs Janzen

ctb

Material

Reference manual
Package source

Vignettes

Create A Twin Tree
pirouette demo
Experiment
Partial function evaluation in pirouette
Tutorial
Twinning

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

pirouette archive

Imports

ape
beautier ≥ 2.6.2
beastier ≥ 2.4.6
babette ≥2.1.1
DDD
forcats
magrittr
mauricer ≥ 2.5
mcbette ≥1.7
nodeSub
phangorn
phytools
plyr
pryr
readr
stringr
TESS
tibble
tidyr
tracerer ≥ 2.0.2
xtable

Suggests

devtools
dplyr
ggplot2
knitr
lintr
markdown
nLTT ≥1.4.3
rappdirs
rmarkdown
Rmpfr
testthat ≥ 2.1.0