CRAN/E | babette

babette

Control 'BEAST2'

Installation

About

'BEAST2' () is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'BEAST2' is commonly accompanied by 'BEAUti 2', 'Tracer' and 'DensiTree'. 'babette' provides for an alternative workflow of using all these tools separately. This allows doing complex Bayesian phylogenetics easily and reproducibly from 'R'.

Citation babette citation info
docs.ropensci.org/babette/ (website) https://github.com/ropensci/babette/
docs.ropensci.org/babette/ (website) https://github.com/ropensci/babette/
System requirements BEAST2 (https://www.beast2.org/)
Bug report File report

Key Metrics

Version 2.3.3
R ≥ 3.5.0
Published 2023-09-27 205 days ago
Needs compilation? no
License GPL-3
CRAN checks babette results
Language en-US

Downloads

Yesterday 1
Last 7 days 5 -81%
Last 30 days 107 -28%
Last 90 days 459 +17%
Last 365 days 3.440 -39%

Maintainer

Maintainer

Richèl J.C. Bilderbeek

richel@richelbilderbeek.nl

Authors

Richèl J.C. Bilderbeek

aut / cre

Joëlle Barido-Sottani

rev

(Joëlle reviewed the package for rOpenSci, see https://github.com/richelbilderbeek/onboarding/issues/209)

David Winter

rev

(David reviewed the package for rOpenSci, see https://github.com/richelbilderbeek/onboarding/issues/209)

Jason Griffiths

ctb

Giovanni Laudanno

ctb

Material

Reference manual
Package source

Vignettes

babette demo
Examples
Nested Sampling
babette: Step by Step
babette Tutorial

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

babette archive

Depends

beautier ≥ 2.6.9
beastier ≥ 2.4.11
mauricer ≥2.5.2
R ≥ 3.5.0
tracerer

Imports

phangorn
remotes
stringr
xml2

Suggests

ape
curl
ggplot2
hunspell
knitr
lintr
markdown
nLTT
rappdirs
rmarkdown
spelling
testthat ≥ 2.1.0

Reverse Depends

pirouette

Reverse Imports

mcbette
nodeSub