CRAN/E | TESS

TESS

Diversification Rate Estimation and Fast Simulation of Reconstructed Phylogenetic Trees under Tree-Wide Time-Heterogeneous Birth-Death Processes Including Mass-Extinction Events

Installation

About

Simulation of reconstructed phylogenetic trees under tree-wide time-heterogeneous birth-death processes and estimation of diversification parameters under the same model. Speciation and extinction rates can be any function of time and mass-extinction events at specific times can be provided. Trees can be simulated either conditioned on the number of species, the time of the process, or both. Additionally, the likelihood equations are implemented for convenience and can be used for Maximum Likelihood (ML) estimation and Bayesian inference.

Citation TESS citation info

Key Metrics

Version 2.1.2
Published 2022-04-25 704 days ago
Needs compilation? yes
License GPL-3
CRAN checks TESS results

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Maintainer

Maintainer

Sebastian Hoehna

Sebastian.Hoehna@gmail.com

Authors

Sebastian Hoehna
Michael R. May

Material

NEWS
Reference manual
Package source

Vignettes

Bayesian_Diversification_Rate_Analysis

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

TESS archive

Depends

ape
coda
deSolve

Imports

Rcpp ≥ 0.11.0
methods

LinkingTo

Rcpp

Reverse Imports

RPANDA

Reverse Suggests

nLTT