CRAN/E | MOSS

MOSS

Multi-Omic Integration via Sparse Singular Value Decomposition

Installation

About

High dimensionality, noise and heterogeneity among samples and features challenge the omic integration task. Here we present an omic integration method based on sparse singular value decomposition (SVD) to deal with these limitations, by: a. obtaining the main axes of variation of the combined omics, b. imposing sparsity constraints at both subjects (rows) and features (columns) levels using Elastic Net type of shrinkage, and c. allowing both linear and non-linear projections (via t-Stochastic Neighbor Embedding) of the omic data to detect clusters in very convoluted data (Gonzalez-Reymundez et. al, 2022) doi:10.1093/bioinformatics/btac179.

github.com/agugonrey/MOSS
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Key Metrics

Version 0.2.2
Published 2022-03-25 768 days ago
Needs compilation? no
License GPL-2
CRAN checks MOSS results
Language en-US

Downloads

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Last 30 days 718 +4%
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Last 365 days 7.664 +15%

Maintainer

Maintainer

Agustin Gonzalez-Reymundez

agugonrey@gmail.com

Authors

Agustin Gonzalez-Reymundez

aut / cre / cph

Alexander Grueneberg

aut

Ana Vazquez

ctb / ths

Material

README
NEWS
Reference manual
Package source

Vignettes

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macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

MOSS archive

Imports

cluster
dbscan
Rtsne
stats

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