CRAN/E | bigstatsr

bigstatsr

Statistical Tools for Filebacked Big Matrices

Installation

About

Easy-to-use, efficient, flexible and scalable statistical tools. Package bigstatsr provides and uses Filebacked Big Matrices via memory-mapping. It provides for instance matrix operations, Principal Component Analysis, sparse linear supervised models, utility functions and more doi:10.1093/bioinformatics/bty185.

Citation bigstatsr citation info
privefl.github.io/bigstatsr/
Bug report File report

Key Metrics

Version 1.5.12
R ≥ 3.4
Published 2022-10-14 531 days ago
Needs compilation? yes
License GPL-3
CRAN checks bigstatsr results
Language en-US

Downloads

Yesterday 90 +36%
Last 7 days 650 -20%
Last 30 days 2.215 -55%
Last 90 days 12.186 +35%
Last 365 days 33.578 +25%

Maintainer

Maintainer

Florian Privé

florian.prive.21@gmail.com

Authors

Florian Privé

aut / cre

Michael Blum

ths

Hugues Aschard

ths

Material

README
NEWS
Reference manual
Package source

In Views

HighPerformanceComputing

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

bigstatsr archive

Depends

R ≥ 3.4

Imports

bigassertr ≥ 0.1.1
bigparallelr ≥ 0.2.3
cowplot
foreach
ggplot2 ≥ 3.0
graphics
methods
ps ≥ 1.4
Rcpp
rmio ≥ 0.4
RSpectra
stats
tibble
utils

Suggests

bigmemory ≥ 4.5.33
bigreadr ≥ 0.2
covr
data.table
dplyr
glmnet
hexbin
memuse
ModelMetrics
plotly
ppcor
RhpcBLASctl
spelling ≥ 1.2
testthat

LinkingTo

Rcpp
RcppArmadillo
rmio

Reverse Depends

bigsnpr

Reverse Imports

bigdist
chickn
Directional
HDBRR
MAGAR
pchc
PRSPGx

Reverse Suggests

MOSS
Platypus
uwot

Reverse LinkingTo

bigsnpr
chickn