CRAN/E | viewpoly

viewpoly

A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species

Installation

About

Provides a graphical user interface to integrate, visualize and explore results from linkage and quantitative trait loci analysis, together with genomic information for autopolyploid species. The app is meant for interactive use and allows users to optionally upload different sources of information, including gene annotation and alignment files, enabling the exploitation and search for candidate genes in a genome browser. In its current version, 'VIEWpoly' supports inputs from 'MAPpoly', 'polymapR', 'diaQTL', 'QTLpoly', 'polyqtlR', 'GWASpoly', and 'HIDECAN' packages.

github.com/mmollina/viewpoly
Bug report File report

Key Metrics

Version 0.4.1
R ≥ 4.0
Published 2024-03-28 36 days ago
Needs compilation? no
License GPL (≥ 3)
CRAN checks viewpoly results
Language en-US

Downloads

Yesterday 22 0%
Last 7 days 70 -7%
Last 30 days 319 -2%
Last 90 days 766 -16%
Last 365 days 3.122 -8%

Maintainer

Maintainer

Cristiane Taniguti

chtaniguti@tamu.edu

Authors

Cristiane Taniguti

aut / cre

Gabriel de Siqueira Gesteira

aut

Jeekin Lau

aut

Olivia Angelin-Bonnet

aut

Susan Thomson

ctb

Guilherme da Silva Pereira

ctb

David Byrne

ctb

Zhao-Bang Zeng

ctb

Oscar Riera-Lizarazu

ctb

Marcelo Mollinari

aut

Material

README
NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

viewpoly archive

Depends

R ≥ 4.0

Imports

shiny ≥ 1.6.0
shinyjs
shinythemes
shinyWidgets
shinydashboard
config ≥ 0.3.1
golem ≥ 0.3.1
JBrowseR
dplyr
tidyr
DT
ggplot2
ggpubr
plotly
vroom
abind
reshape2
markdown
stats
hidecan
purrr

Suggests

testthat ≥ 3.0.0
shinytest
rlang
pkgload
vdiffr