CRAN/E | JBrowseR

JBrowseR

An R Interface to the JBrowse 2 Genome Browser

Installation

About

Provides an R interface to the JBrowse 2 genome browser. Enables embedding a JB2 genome browser in a Shiny app or R Markdown document. The browser can also be launched from an interactive R console. The browser can be loaded with a variety of common genomics data types, and can be used with a custom theme.

gmod.github.io/JBrowseR/ https://github.com/GMOD/JBrowseR
gmod.github.io/JBrowseR/ https://github.com/GMOD/JBrowseR

Key Metrics

Version 0.10.2
Published 2023-12-20 133 days ago
Needs compilation? no
License Apache License (≥ 2)
CRAN checks JBrowseR results

Downloads

Yesterday 12 -14%
Last 7 days 94 -16%
Last 30 days 351 -7%
Last 90 days 1.044 -31%
Last 365 days 4.744 +5%

Maintainer

Maintainer

Colin Diesh

colin.diesh@gmail.com

Authors

Elliot Hershberg

aut

Colin Diesh

aut / cre

the JBrowse 2 Team

aut

Material

README
NEWS
Reference manual
Package source

In Views

Omics

Vignettes

Introduction to JBrowseR
Creating URLs
Custom browser tutorial
Advanced JSON tutorial

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

JBrowseR archive

Imports

htmltools
htmlwidgets
reactR
stringr
magrittr
readr
jsonlite
httpuv
mime
cli
ids
dplyr

Suggests

testthat ≥ 3.0.0
knitr
rmarkdown

Reverse Imports

viewpoly