CRAN/E | treespace

treespace

Statistical Exploration of Landscapes of Phylogenetic Trees

Installation

About

Tools for the exploration of distributions of phylogenetic trees. This package includes a 'shiny' interface which can be started from R using treespaceServer(). For further details see Jombart et al. (2017) doi:10.1111/1755-0998.12676.

Citation treespace citation info
cran.r-project.org/package=treespace
github.com/thibautjombart/treespace
Bug report File report

Key Metrics

Version 1.1.4.3
R ≥ 3.4.0
Published 2023-09-07 233 days ago
Needs compilation? yes
License MIT
License File
CRAN checks treespace results

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Maintainer

Maintainer

Michelle Kendall

michelle.kendall@warwick.ac.uk

Authors

Thibaut Jombart

aut

Michelle Kendall

aut / cre

Jacob Almagro-Garcia

aut

Caroline Colijn

aut

Material

README
NEWS
Reference manual
Package source

In Views

Phylogenetics

Vignettes

treespace worked example: Dengue trees
treespace worked example: Transmission trees
Exploration of landscapes of phylogenetic trees
Comparing trees by tip label categories

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

treespace archive

Depends

R ≥ 3.4.0
ape
ade4

Imports

adegenet
adegraphics
combinat
compiler
distory
fields
htmlwidgets
MASS
methods
parallel
phangorn
phytools
Rcpp
rgl
RLumShiny
scatterD3
shiny
shinyBS
utils

Suggests

ggplot2
igraph
knitr
pander
RColorBrewer
reshape2
rmarkdown
sf
testthat

LinkingTo

Rcpp