CRAN/E | ogrdbstats

ogrdbstats

Analysis of Adaptive Immune Receptor Repertoire Germ Line Statistics

Installation

About

Multiple tools are now available for inferring the personalised germ line set from an adaptive immune receptor repertoire. Output from these tools is converted to a single format and supplemented with rich data such as usage and characterisation of 'novel' germ line alleles. This data can be particularly useful when considering the validity of novel inferences. Use of the analysis provided is described in doi:10.3389/fimmu.2019.00435.

github.com/airr-community/ogrdbstats
Bug report File report

Key Metrics

Version 0.5.0
R ≥ 2.10
Published 2023-03-09 417 days ago
Needs compilation? no
License CC BY-SA 4.0
CRAN checks ogrdbstats results

Downloads

Yesterday 10 0%
Last 7 days 82 +15%
Last 30 days 244 -0%
Last 90 days 697 -21%
Last 365 days 2.909 +437%

Maintainer

Maintainer

William Lees

william@lees.org.uk

Authors

William Lees

aut / cre

Material

NEWS
Reference manual
Package source

Vignettes

Using ogrdbstats

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Depends

R ≥ 2.10

Imports

dplyr ≥ 0.8.3
ggplot2 ≥ 3.2.1
magrittr
tigger ≥0.4.0
alakazam ≥ 0.3.0
stringr ≥ 1.4.0
data.table
gridExtra ≥ 2.3
tidyr ≥ 1.0.0
stringdist ≥ 0.9.5.2
RColorBrewer ≥ 1.1-2
Biostrings ≥ 2.52.0
argparser ≥0.4
ComplexHeatmap
bookdown
scales

Suggests

knitr
rmarkdown