CRAN/E | tigger

tigger

Infers Novel Immunoglobulin Alleles from Sequencing Data

Installation

About

Infers the V genotype of an individual from immunoglobulin (Ig) repertoire sequencing data (AIRR-Seq, Rep-Seq). Includes detection of any novel alleles. This information is then used to correct existing V allele calls from among the sample sequences. Citations: Gadala-Maria, et al (2015) doi:10.1073/pnas.1417683112, Gadala-Maria, et al (2019) doi:10.3389/fimmu.2019.00129.

Citation tigger citation info
tigger.readthedocs.io
Bug report File report

Key Metrics

Version 1.1.0
R ≥ 4.0
Published 2023-10-10 204 days ago
Needs compilation? no
License AGPL-3
CRAN checks tigger results

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Maintainer

Maintainer

Susanna Marquez

susanna.marquez@yale.edu

Authors

Daniel Gadala-Maria

aut

Susanna Marquez

aut / cre

Moriah Cohen

aut

Jason Vander Heiden

aut

Gur Yaari

aut

Steven Kleinstein

aut / cph

Material

README
NEWS
Reference manual
Package source

Vignettes

Polymorphism detection and genotyping

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

tigger archive

Depends

R ≥ 4.0
ggplot2 ≥ 3.4.0

Imports

alakazam ≥ 1.3.0
dplyr ≥ 1.0.0
doParallel
foreach
graphics
gridExtra
gtools
iterators
lazyeval
parallel
rlang
stats
stringi
tidyr ≥ 1.1.0
utils

Suggests

knitr
rmarkdown
testthat

Reverse Imports

ogrdbstats
piglet
rabhit