alakazam
Immunoglobulin Clonal Lineage and Diversity Analysis
Provides methods for high-throughput adaptive immune receptor repertoire sequencing (AIRR-Seq; Rep-Seq) analysis. In particular, immunoglobulin (Ig) sequence lineage reconstruction, lineage topology analysis, diversity profiling, amino acid property analysis and gene usage. Citations: Gupta and Vander Heiden, et al (2017) doi:10.1093/bioinformatics/btv359, Stern, Yaari and Vander Heiden, et al (2014) doi:10.1126/scitranslmed.3008879.
- Version1.4.0
- R versionR (≥ 4.0)
- LicenseAGPL-3
- Needs compilation?Yes
- alakazam citation info
- Last release09/25/2025
Documentation
Team
Susanna Marquez
MaintainerShow author detailsNima Nouri
Show author detailsRolesAuthorCole Jensen
Show author detailsRolesContributor, AuthorSteven Kleinstein
Show author detailsRolesAuthor, Copyright holderRuoyi Jiang
Show author detailsRolesAuthorEdel Aron
Show author detailsRolesContributorDaniel Gadala-Maria
Show author detailsRolesContributorJason Vander Heiden
Show author detailsRolesAuthorKenneth Hoehn
Show author detailsRolesAuthorNamita Gupta
Show author detailsRolesAuthorJulian Zhou
Show author detailsRolesAuthorCaroline Sullivan
Show author detailsRolesContributorGisela Gabernet
Show author detailsRolesContributorHailong Meng
Show author detailsRolesContributorBurhan Sabuwala
Show author detailsRolesContributor
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Dependencies
- Depends1 package
- Imports14 packages
- Suggests3 packages
- Linking To1 package
- Reverse Imports6 packages
- Reverse Suggests1 package