CRAN/E | jSDM

jSDM

Joint Species Distribution Models

Installation

About

Fits joint species distribution models ('jSDM') in a hierarchical Bayesian framework (Warton and al. 2015 doi:10.1016/j.tree.2015.09.007). The Gibbs sampler is written in C++. It uses 'Rcpp', 'Armadillo' and 'GSL' to maximize computation efficiency.

ecology.ghislainv.fr/jSDM/
github.com/ghislainv/jSDM
System requirements GNU GSL
Bug report File report

Key Metrics

Version 0.2.2
R ≥ 3.5.0
Published 2023-03-02 423 days ago
Needs compilation? yes
License GPL-3
License File
CRAN checks jSDM results

Downloads

Yesterday 5 -50%
Last 7 days 80 +54%
Last 30 days 230 +2%
Last 90 days 682 -20%
Last 365 days 2.575 -21%

Maintainer

Maintainer

Jeanne Clément

jeanne.clement16@laposte.net

Authors

Jeanne Clément

aut / cre

Ghislain Vieilledent

aut

Frédéric Gosselin

ctb

CIRAD

cph / fnd

Material

README
NEWS
Reference manual
Package source

Vignettes

Get started with jSDM
Bayesian inference methods

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

jSDM archive

Depends

R ≥ 3.5.0

Imports

Rcpp ≥ 1.0.0
graphics
stats
coda
corrplot
stringi
MASS
parallel
doParallel
foreach
methods

Suggests

knitr
kableExtra
terra
dplyr
rmarkdown
bookdown
testthat ≥ 3.0.0
boral
Hmsc
BayesComm
snow
snowfall
ggplot2
covr

LinkingTo

Rcpp
RcppArmadillo
RcppGSL