CRAN/E | detrendr

detrendr

Detrend Images

Installation

About

Detrend fluorescence microscopy image series for fluorescence fluctuation and correlation spectroscopy ('FCS' and 'FFS') analysis. This package contains functionality published in a 2016 paper doi:10.1093/bioinformatics/btx434 but it has been extended since then with the Robin Hood algorithm and thus contains unpublished work.

Citation detrendr citation info
rorynolan.github.io/detrendr/
github.com/rorynolan/detrendr#readme
System requirements GNU make
Bug report File report

Key Metrics

Version 0.6.15
R ≥ 3.1
Published 2023-03-04 419 days ago
Needs compilation? yes
License BSD_3_clause
License File
CRAN checks detrendr results
Language en-US

Downloads

Yesterday 45 +350%
Last 7 days 205 0%
Last 30 days 956 -1%
Last 90 days 2.862 +4%
Last 365 days 10.759 +7%

Maintainer

Maintainer

Rory Nolan

rorynoolan@gmail.com

Authors

Rory Nolan

aut / cre

Luis Alvarez

ctb / cph

Sergi Padilla-Parra

ctb / ths / cph

Material

README
NEWS
Reference manual
Package source

Vignettes

Batch mode
Linescan data
Detrending single images

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

detrendr archive

Depends

R ≥ 3.1

Imports

arrayhelpers ≥ 1.1.0
autothresholdr ≥ 1.3.11
checkmate ≥ 1.9.3
doParallel
dplyr
filesstrings ≥ 3.2.4
foreach
ijtiff ≥ 2.2
iterators
magrittr ≥ 1.5
parallel
plyr
purrr
Rcpp ≥ 1.0.10
RcppParallel ≥5.1.7
rlang ≥ 0.3.3
stringr ≥ 1.4
tools
withr ≥2.1

Suggests

abind
covr
ggplot2
glue ≥ 1.3.0
graphics
gridExtra
knitr
lattice
MASS
matrixStats
mgcv
pacman
R.utils
rmarkdown
spelling
testthat ≥ 3.0
tidyr

LinkingTo

Rcpp ≥ 1.0.10
RcppParallel ≥ 5.1.7

Reverse Imports

nandb