CRAN/E | nandb

nandb

Number and Brightness Image Analysis

Installation

About

Calculation of molecular number and brightness from fluorescence microscopy image series. The software was published in a 2016 paper doi:10.1093/bioinformatics/btx434. The seminal paper for the technique is Digman et al. 2008 doi:10.1529/biophysj.107.114645. A review of the technique was published in 2017 doi:10.1016/j.ymeth.2017.12.001.

Citation nandb citation info
rorynolan.github.io/nandb/
github.com/rorynolan/nandb
Bug report File report

Key Metrics

Version 2.1.0
R ≥ 3.1
Published 2021-05-16 1077 days ago
Needs compilation? yes
License BSD_3_clause
License File
CRAN checks nandb results
Language en-US

Downloads

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Last 365 days 3.753 -3%

Maintainer

Maintainer

Rory Nolan

rorynoolan@gmail.com

Authors

Rory Nolan

aut / cre / cph

Luis Alvarez

ctb / cph

Sergi Padilla-Parra

ctb / ths / cph

Material

README
NEWS
Reference manual
Package source

Vignettes

Batch mode
Brightness timeseries
Calculating brightness with single images

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

nandb archive

Depends

R ≥ 3.1

Imports

assertthat
autothresholdr ≥ 1.3.11
BBmisc
checkmate ≥1.9.3
detrendr ≥ 0.6.12
dplyr
filesstrings ≥ 3.2
ggplot2
glue ≥ 1.3
ijtiff ≥ 2.2
magrittr ≥ 1.5
purrr
Rcpp ≥ 1.0.1
reshape2
rlang ≥ 0.3.3
stringr ≥1.4
utils
viridis
withr ≥ 2.1.0

Suggests

abind
covr
gridExtra
knitr
matrixStats ≥ 0.50
pacman
rmarkdown
spelling
testthat ≥ 2.1
tidyr

LinkingTo

Rcpp ≥ 1.0.1