CRAN/E | ddpcr

ddpcr

Analysis and Visualization of Droplet Digital PCR in R and on the Web

Installation

About

An interface to explore, analyze, and visualize droplet digital PCR (ddPCR) data in R. This is the first non-proprietary software for analyzing two-channel ddPCR data. An interactive tool was also created and is available online to facilitate this analysis for anyone who is not comfortable with using R.

github.com/daattali/ddpcr
daattali.com/shiny/ddpcr/
Bug report File report

Key Metrics

Version 1.15.2
R ≥ 3.1.0
Published 2023-08-20 250 days ago
Needs compilation? no
License MIT
License File
CRAN checks ddpcr results

Downloads

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Maintainer

Maintainer

Dean Attali

daattali@gmail.com

Authors

Dean Attali

aut / cre

Material

README
NEWS
Reference manual
Package source

Vignettes

Algorithms in ddpcr analysis
Extending ddpcr by adding new plate types
Package ddpcr
Implementation technical details

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

ddpcr archive

Depends

R ≥ 3.1.0

Imports

DT ≥ 0.2
dplyr ≥ 0.5.0
ggplot2 ≥ 2.2.0
lazyeval ≥ 0.1.10
magrittr ≥ 1.5
mixtools ≥ 1.0.2
plyr ≥1.8.1
readr ≥ 0.1.0
shiny ≥ 0.11.0
shinydisconnect
shinyjs ≥ 0.4.0
tibble

Suggests

ggExtra ≥ 0.3.0
graphics
grid ≥ 3.2.2
gridExtra ≥2.0.0
knitr ≥ 1.7
rmarkdown
stats
testthat ≥ 0.11.0
utils

Reverse Imports

CDatanet

Reverse Suggests

RRphylo
vMF