CRAN/E | RRphylo

RRphylo

Phylogenetic Ridge Regression Methods for Comparative Studies

Installation

About

Functions for phylogenetic analysis (Castiglione et al., 2018 doi:10.1111/2041-210X.12954). The functions perform the estimation of phenotypic evolutionary rates, identification of phenotypic evolutionary rate shifts, quantification of direction and size of evolutionary change in multivariate traits, the computation of ontogenetic shape vectors and test for morphological convergence.

Citation RRphylo citation info

Key Metrics

Version 2.8.0
R ≥ 3.6.0
Published 2023-06-04 298 days ago
Needs compilation? no
License GPL-2
CRAN checks RRphylo results

Downloads

Yesterday 43 +291%
Last 7 days 133 -10%
Last 30 days 550 0%
Last 90 days 1.666 +33%
Last 365 days 5.795 -12%

Maintainer

Maintainer

Pasquale Raia

pasquale.raia@unina.it

Authors

Pasquale Raia
Silvia Castiglione
Carmela Serio
Alessandro Mondanaro
Marina Melchionna
Mirko Di Febbraro
Antonio Profico
Francesco Carotenuto

Material

README
Reference manual
Package source

Vignettes

Plotting-tools
RRphylo
Tree-Manipulation
overfitRR
search.conv
search.shift
search.trend
swapONE

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

RRphylo archive

Depends

R ≥ 3.6.0
emmeans ≥ 1.4.3

Imports

ape
phytools
stats4
foreach
doParallel
parallel

Suggests

phangorn
rlist
scales
R.utils
cluster
RColorBrewer
nlme
car
smatr
picante
vegan
ddpcr
geomorph
rmarkdown
knitr
kableExtra
plotrix
pdftools
rgl
mvMORPH
ggplot2
qpdf
inflection
Rvcg
Morpho
evolqg
manipulate
markdown
Rphylopars
phylolm
webshot2
testthat ≥ 3.0.0