CRAN/E | crosshap

crosshap

Local Haplotype Clustering and Visualization

Installation

About

A local haplotyping visualization toolbox to capture major patterns of co-inheritance between clusters of linked variants, whilst connecting findings to phenotypic and demographic traits across individuals. 'crosshap' enables users to explore and understand genomic variation across a trait-associated region. For an example of successful local haplotype analysis, see Marsh et al. (2022) doi:10.1007/s00122-022-04045-8.

jacobimarsh.github.io/crosshap/
Bug report File report

Key Metrics

Version 1.4.0
R ≥ 4.00
Published 2024-03-31 34 days ago
Needs compilation? no
License MIT
License File
CRAN checks crosshap results

Downloads

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Maintainer

Maintainer

Jacob Marsh

jake.marsh@live.com.au

Authors

Jacob Marsh

aut / cre

Brady Johnston

aut

Jakob Petereit

aut

Material

README
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

crosshap archive

Depends

R ≥ 4.00

Imports

cli
clustree
data.table
dbscan
dplyr
ggdist
ggplot2
ggpp
gridExtra
gtable
magrittr
patchwork
rlang
scales
tibble
tidyr

Suggests

covr
knitr
rmarkdown
testthat ≥ 3.0.0
umap
vdiffr