CRAN/E | clustree

clustree

Visualise Clusterings at Different Resolutions

Installation

About

Deciding what resolution to use can be a difficult question when approaching a clustering analysis. One way to approach this problem is to look at how samples move as the number of clusters increases. This package allows you to produce clustering trees, a visualisation for interrogating clusterings as resolution increases.

Citation clustree citation info
github.com/lazappi/clustree
lazappi.github.io/clustree/
Bug report File report

Key Metrics

Version 0.5.1
R ≥ 3.5
Published 2023-11-05 173 days ago
Needs compilation? no
License GPL-3
CRAN checks clustree results
Language en-GB

Downloads

Yesterday 134 0%
Last 7 days 655 -30%
Last 30 days 3.319 -16%
Last 90 days 10.217 -22%
Last 365 days 37.705 +34%

Maintainer

Maintainer

Luke Zappia

luke@lazappi.id.au

Authors

Luke Zappia

aut / cre

Alicia Oshlack

aut

Andrea Rau

ctb

Paul Hoffman

ctb

Material

README
NEWS
Reference manual
Package source

Vignettes

Plotting clustering trees

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

clustree archive

Depends

R ≥ 3.5
ggraph

Imports

checkmate
igraph
dplyr
grid
ggplot2 ≥ 3.4.0
viridis
methods
rlang
tidygraph
ggrepel

Suggests

testthat ≥ 2.1.0
knitr
rmarkdown
SingleCellExperiment
Seurat ≥ 2.3.0
covr
SummarizedExperiment
pkgdown
spelling

Reverse Imports

crosshap
scRNAstat
scTreeViz

Reverse Suggests

CIARA
MitoHEAR