CRAN/E | chickn

chickn

'Compressive' Hierarchical Kernel Clustering Toolbox

Installation

About

Routines for efficient cluster analysis of large scale data. This package implements the 'CHICKN' clustering algorithm (see 'Permiakova' 'et' 'al.' (2020) "'CHICKN': Extraction of 'peptide' 'chromatographic' 'elution' profiles from large scale mass 'spectrometry' data by means of 'Wasserstein' 'compressive' hierarchical cluster analysis"). Functions for data compression, hierarchical clustering and post processing are provided.

System requirements C++11

Key Metrics

Version 1.2.3
R ≥ 3.5
Published 2020-11-24 1250 days ago
Needs compilation? yes
License GPL-2
License GPL-3
CRAN checks chickn results

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Maintainer

Maintainer

Olga Permiakova

olga.permiakova@gmail.com

Authors

Olga Permiakova

aut / cre

Romain Guibert

aut

Thomas Burger

aut

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

chickn archive

Depends

R ≥ 3.5

Imports

Rcpp
bigstatsr ≥ 1.2.3
RcppParallel
mvnfast
zipfR
MASS
pracma
nloptr
foreach
doRNG
parallel
doParallel
Rdpack

LinkingTo

Rcpp
RcppArmadillo
RcppParallel
bigstatsr ≥ 1.2.3
rmio