CRAN/E | SRTsim

SRTsim

Simulator for Spatially Resolved Transcriptomics

Installation

About

An independent, reproducible, and flexible Spatially Resolved Transcriptomics (SRT) simulation framework that can be used to facilitate the development of SRT analytical methods for a wide variety of SRT-specific analyses. It utilizes spatial localization information to simulate SRT expression count data in a reproducible and scalable fashion. Two major simulation schemes are implemented in 'SRTsim': reference-based and reference-free.

Key Metrics

Version 0.99.6
R ≥ 3.5.0
Published 2023-01-13 473 days ago
Needs compilation? no
License GPL (≥ 3)
CRAN checks SRTsim results

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Maintainer

Maintainer

Jiaqiang Zhu

jiaqiang@umich.edu

Authors

Jiaqiang Zhu

aut / ctb / cre

Lulu Shang

aut

Xiang Zhou

aut

Material

Reference manual
Package source

Vignettes

Introduction to SRTsim

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

SRTsim archive

Depends

R ≥ 3.5.0
methods

Imports

concaveman
sf
sp
spatstat.geom
parallel
pdist
MASS
S4Vectors
stats
Matrix
Morpho
matrixStats
plotly
shiny
viridis
shinydashboard
dashboardthemes
shinyBS
ggplot2
ggpubr
spatstat.random
magrittr
FNN
dplyr

Suggests

knitr
rmarkdown
BiocStyle
RefManageR
BiocManager
sessioninfo