CRAN/E | Racmacs

Racmacs

Antigenic Cartography Macros

Installation

About

A toolkit for making antigenic maps from immunological assay data, in order to quantify and visualize antigenic differences between different pathogen strains as described in Smith et al. (2004) doi:10.1126/science.1097211 and used in the World Health Organization influenza vaccine strain selection process. Additional functions allow for the diagnostic evaluation of antigenic maps and an interactive viewer is provided to explore antigenic relationships amongst several strains and incorporate the visualization of associated genetic information.

acorg.github.io/Racmacs/
github.com/acorg/Racmacs/
Bug report File report

Key Metrics

Version 1.2.9
R ≥ 4.0
Published 2023-11-30 149 days ago
Needs compilation? yes
License AGPL-3
CRAN checks Racmacs results
Language en-GB

Downloads

Yesterday 7 0%
Last 7 days 43 -33%
Last 30 days 246 -16%
Last 90 days 754 -7%
Last 365 days 1.952

Maintainer

Maintainer

Sam Wilks

sw463@cam.ac.uk

Authors

Sam Wilks

aut / cre

Material

README
NEWS
Reference manual
Package source

Vignettes

Working with sequence data
Assessing map uncertainty
Comparing maps
Customising map appearance
Making an antigenic map from titer data
Merging maps

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

Racmacs archive

Depends

R ≥ 4.0

Imports

Rcpp
jsonlite
ks
brotli
shiny
shinyFiles
shinyjs
htmlwidgets
ggplot2 ≥ 3.0.0
htmltools
rmarchingcubes
shape
ellipsis
MASS
magrittr
igraph
dplyr
vctrs
rlang

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