CRAN/E | ProFAST

ProFAST

Probabilistic Factor Analysis for Spatially-Aware Dimension Reduction

Installation

About

Probabilistic factor analysis for spatially-aware dimension reduction across multi-section spatial transcriptomics data with millions of spatial locations. More details can be referred to Wei Liu, et al. (2023) doi:10.1101/2023.07.11.548486.

github.com/feiyoung/ProFAST
Bug report File report

Key Metrics

Version 1.4
R ≥ 4.0.0
Published 2024-03-18 40 days ago
Needs compilation? yes
License GPL-3
CRAN checks ProFAST results

Downloads

Yesterday 9 0%
Last 7 days 42 -9%
Last 30 days 193 -32%
Last 90 days 613 -7%
Last 365 days 1.979

Maintainer

Maintainer

Wei Liu

liuweideng@gmail.com

Authors

Wei Liu

aut / cre

Xiao Zhang

aut

Jin Liu

aut

Material

README
Reference manual
Package source

Vignettes

CoFAST: NSCLC CosMx data coembedding
FAST: single DLPFC section
FAST: two DLPFC sections
FAST: simulation
CoFAST: PBMC scRNA-seq data coembedding

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

ProFAST archive

Depends

R ≥ 4.0.0
gtools

Imports

Rcpp ≥ 1.0.10
furrr
future
ggplot2
AnnotationDbi
DR.SC
Matrix
mclust
PRECAST
pbapply
biomaRt
irlba
org.Hs.eg.db
org.Mm.eg.db
Seurat
parallel
harmony
methods
stats
utils

Suggests

knitr
rmarkdown
performance
nnet
scater
ggrepel
RANN
grDevices

LinkingTo

Rcpp
RcppArmadillo