CRAN/E | DR.SC

DR.SC

Joint Dimension Reduction and Spatial Clustering

Installation

About

Joint dimension reduction and spatial clustering is conducted for Single-cell RNA sequencing and spatial transcriptomics data, and more details can be referred to Wei Liu, Xu Liao, Yi Yang, Huazhen Lin, Joe Yeong, Xiang Zhou, Xingjie Shi and Jin Liu. (2022) doi:10.1093/nar/gkac219. It is not only computationally efficient and scalable to the sample size increment, but also is capable of choosing the smoothness parameter and the number of clusters as well.

github.com/feiyoung/DR.SC
Bug report File report

Key Metrics

Version 3.4
R ≥ 4.0.0
Published 2024-03-19 31 days ago
Needs compilation? yes
License GPL-3
CRAN checks DR.SC results

Downloads

Yesterday 6
Last 7 days 33 -67%
Last 30 days 542 +27%
Last 90 days 1.485 +33%
Last 365 days 6.345 +50%

Maintainer

Maintainer

Wei Liu

liuweideng@gmail.com

Authors

Wei Liu

aut / cre

Yi Yang

aut

Jin Liu

aut

Material

README
Reference manual
Package source

Vignettes

DR-SC
DR-SC DLPFC
DR-SC Simulation

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

DR.SC archive

Depends

parallel
spatstat.geom
R ≥ 4.0.0

Imports

CompQuadForm
irlba
cowplot
ggplot2
GiRaF
MASS
Matrix
mclust
methods
purrr
S4Vectors
RColorBrewer
Rcpp ≥1.0.5
Seurat
stats

Suggests

knitr
rmarkdown

LinkingTo

Rcpp
RcppArmadillo

Reverse Imports

PRECAST
ProFAST