CRAN/E | harmony

harmony

Fast, Sensitive, and Accurate Integration of Single Cell Data

Installation

About

Implementation of the Harmony algorithm for single cell integration, described in Korsunsky et al doi:10.1038/s41592-019-0619-0. Package includes a standalone Harmony function and interfaces to external frameworks.

Key Metrics

Version 1.2.0
R ≥ 3.5.0
Published 2023-11-29 121 days ago
Needs compilation? yes
License GPL-3
CRAN checks harmony results

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Maintainer

Maintainer

Ilya Korsunsky

ilya.korsunsky@gmail.com

Authors

Ilya Korsunsky

cre / aut

Martin Hemberg

aut

Nikolaos Patikas

aut / ctb

Hongcheng Yao

aut / ctb

Nghia Millard

aut

Jean Fan

aut / ctb

Kamil Slowikowski

aut / ctb

Miles Smith

ctb

Soumya Raychaudhuri

aut

Material

NEWS
Reference manual
Package source

Vignettes

Using harmony in Seurat
Detailed Walkthrough of Harmony Algorithm
Quick start to Harmony

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

harmony archive

Depends

R ≥ 3.5.0
Rcpp

Imports

dplyr
cowplot
ggplot2
Matrix
methods
tibble
rlang
RhpcBLASctl

Suggests

SingleCellExperiment
Seurat ≥ 4.1.1
testthat
knitr
rmarkdown
ggthemes
ggrepel
patchwork
tidyverse
tidyr
data.table

LinkingTo

Rcpp
RcppArmadillo
RcppProgress

Reverse Imports

lemur
ProFAST
RaceID
symphony

Reverse Suggests

Seurat
singleCellTK