CRAN/E | Ostats

Ostats

O-Stats, or Pairwise Community-Level Niche Overlap Statistics

Installation

About

O-statistics, or overlap statistics, measure the degree of community-level trait overlap. They are estimated by fitting nonparametric kernel density functions to each species’ trait distribution and calculating their areas of overlap. For instance, the median pairwise overlap for a community is calculated by first determining the overlap of each species pair in trait space, and then taking the median overlap of each species pair in a community. This median overlap value is called the O-statistic (O for overlap). The Ostats() function calculates separate univariate overlap statistics for each trait, while the Ostats_multivariate() function calculates a single multivariate overlap statistic for all traits. O-statistics can be evaluated against null models to obtain standardized effect sizes. 'Ostats' is part of the collaborative Macrosystems Biodiversity Project "Local- to continental-scale drivers of biodiversity across the National Ecological Observatory Network (NEON)." For more information on this project, see the Macrosystems Biodiversity Website (). Calculation of O-statistics is described in Read et al. (2018) doi:10.1111/ecog.03641, and a teaching module for introducing the underlying biological concepts at an undergraduate level is described in Grady et al. (2018) .

neon-biodiversity.github.io/Ostats/
Bug report File report

Key Metrics

Version 0.2.0
R ≥ 3.5.0
Published 2022-09-12 602 days ago
Needs compilation? no
License MIT
License File
CRAN checks Ostats results

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Maintainer

Maintainer

Quentin D. Read

quentin.read@usda.gov

Authors

Quentin D. Read

aut / cre

Arya Yue

aut

Isadora E. Fluck

aut

Benjamin Baiser

aut

John M. Grady

aut

Phoebe L. Zarnetske

aut

Sydne Record

aut

Material

README
Reference manual
Package source

Vignettes

Ostats
multivariate-Ostats

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

Ostats archive

Depends

R ≥ 3.5.0

Imports

sfsmisc
matrixStats
circular
hypervolume
ggplot2
gridExtra
viridis
grid
MASS

Suggests

testthat ≥ 2.1.0
knitr
rmarkdown