CRAN/E | CNVScope

CNVScope

A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization

Installation

About

Provides the ability to create interaction maps, discover CNV map domains (edges), gene annotate interactions, and create interactive visualizations of these CNV interaction maps.

github.com/jamesdalg/CNVScope/
Bug report File report

Key Metrics

Version 3.7.2
R ≥ 4.1.0
Published 2022-03-30 747 days ago
Needs compilation? no
License BSD_3_clause
License File
CRAN checks CNVScope results

Downloads

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Maintainer

Maintainer

James Dalgleish

james.dalgleish@nih.gov

Authors

James Dalgeish
Yonghong Wang
Jack Zhu
Paul Meltzer

Material

NEWS
Reference manual
Package source

Vignettes

Additional Visualization Examples
Creating the TARGET Input matrix from public data
Linear Regression/Postprocess
Power Analysis

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

CNVScope archive

Depends

R ≥ 4.1.0
ggplot2

Imports

tidyr
reshape2
magrittr
jointseg
shiny
RCurl
foreach
GenomicInteractions
Matrix
OpenImageR
biomaRt
matrixStats
plyr
data.table
dplyr
doParallel
stringr
rtracklayer
Hmisc

Suggests

knitr
remotes
pwr
ComplexHeatmap
rmarkdown
HiCseg
igraph
visNetwork
circlize
plotly
InteractionSet
GenomicRanges
GenomicFeatures
IRanges
rslurm
shinythemes
shinycssloaders
DT
logging
heatmaply
S4Vectors
BiocManager
shinyjs
htmltools
htmlwidgets
GenomeInfoDb
BSgenome.Hsapiens.UCSC.hg19
tibble
smoothie