CRAN/E | jointseg

jointseg

Joint Segmentation of Multivariate (Copy Number) Signals

Installation

About

Methods for fast segmentation of multivariate signals into piecewise constant profiles and for generating realistic copy-number profiles. A typical application is the joint segmentation of total DNA copy numbers and allelic ratios obtained from Single Nucleotide Polymorphism (SNP) microarrays in cancer studies. The methods are described in Pierre-Jean, Rigaill and Neuvial (2015) doi:10.1093/bib/bbu026.

Citation jointseg citation info
github.com/mpierrejean/jointseg
Bug report File report

Key Metrics

Version 1.0.2
R ≥ 3.1.0
Published 2019-01-11 1925 days ago
Needs compilation? yes
License LGPL-2.1
License LGPL-3
CRAN checks jointseg results

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Maintainer

Maintainer

Morgane Pierre-Jean

mpierrejean.pro@gmail.com

Authors

Morgane Pierre-Jean

aut / cre

Pierre Neuvial

aut

Guillem Rigaill

aut

Material

README
NEWS
Reference manual
Package source

Vignettes

PSSeg
Generating realistic data

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

jointseg archive

Depends

R ≥ 3.1.0

Imports

acnr ≥ 0.3.1
matrixStats ≥ 0.6.0
DNAcopy

Suggests

PSCBS
R.cache
digest
changepoint ≥ 1.0.2
knitr
rmarkdown
testthat

Reverse Depends

SegCorr

Reverse Imports

CNVScope

Reverse Suggests

penaltyLearning