CRAN/E | Biocomb

Biocomb

Feature Selection and Classification with the Embedded Validation Procedures for Biomedical Data Analysis

Installation

About

Contains functions for the data analysis with the emphasis on biological data, including several algorithms for feature ranking, feature selection, classification algorithms with the embedded validation procedures. The functions can deal with numerical as well as with nominal features. Includes also the functions for calculation of feature AUC (Area Under the ROC Curve) and HUM (hypervolume under manifold) values and construction 2D- and 3D- ROC curves. Provides the calculation of Area Above the RCC (AAC) values and construction of Relative Cost Curves (RCC) to estimate the classifier performance under unequal misclassification costs problem. There exists the special function to deal with missing values, including different imputing schemes.

Key Metrics

Version 0.4
R ≥ 2.13.0
Published 2018-05-18 2170 days ago
Needs compilation? yes
License GPL (≥ 3)
CRAN checks Biocomb results

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Maintainer

Maintainer

Natalia Novoselova

novos65@mail.ru

Authors

Natalia Novoselova
Junxi Wang
Frank Pessler
Frank Klawonn

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

Biocomb archive

Depends

R ≥ 2.13.0
gtools
Rcpp ≥ 0.12.1

Imports

rgl
MASS
e1071
randomForest
pROC
ROCR
arules
pamr
class
nnet
rpart
FSelector
RWeka
grDevices
graphics
stats
utils

LinkingTo

Rcpp