CRAN/E | vivaldi

vivaldi

Viral Variant Location and Diversity

Installation

About

Analysis of minor alleles in Illumina sequencing data of viral genomes. Functions in 'vivaldi' primarily operate on vcf files.

Citation	vivaldi citation info
github.com/GreshamLab/vivaldi
Bug report	File report

Key Metrics

Version	1.0.1
R	≥ 2.10
Published	2023-03-21 408 days ago
Needs compilation?	no
License	MIT
License	File
CRAN checks	vivaldi results

Downloads

Yesterday	4 0%
Last 7 days	53 -15%
Last 30 days	194 -3%
Last 90 days	531 -21%
Last 365 days	2.260 +160%

Maintainer

Maintainer

David Gresham

dg107@nyu.edu

Authors

Marissa Knoll	aut
Katherine Johnson	aut
Megan Hockman	aut
Eric Borenstein	aut
Mohammed Khalfan	aut
Elodie Ghedin	aut
David Gresham	aut / cre / cph

Material

README
Reference manual
Package source

Vignettes

vignette

macOS

r-release	arm64
r-oldrel	arm64
r-release	x86_64
r-oldrel	x86_64

Windows

r-devel	x86_64
r-release	x86_64
r-oldrel	x86_64

Old Sources

vivaldi archive

Depends

R

≥ 2.10

Imports

dplyr	≥ 1.0.2
ggplot2	≥ 3.3.2
glue	≥ 1.4.2
magrittr	≥ 2.0.1
plotly	≥ 4.10.0
seqinr	≥ 4.2-8
tidyr	≥ 1.1.2
tidyselect	≥ 1.1.2
vcfR	≥ 1.12.0

Suggests

kableExtra
knitr
rmarkdown
testthat	≥ 3.0.0