CRAN/E | varitas

varitas

Variant Calling in Targeted Analysis Sequencing Data

Installation

About

Multi-caller variant analysis pipeline for targeted analysis sequencing (TAS) data. Features a modular, automated workflow that can start with raw reads and produces a user-friendly PDF summary and a spreadsheet containing consensus variant information.

System requirements perl, bedtools (>=2.27.1), bwa

Key Metrics

Version 0.0.2
Published 2020-11-14 1258 days ago
Needs compilation? no
License GPL-2
CRAN checks varitas results

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Maintainer

Maintainer

Adam Mills

Adam.Mills@icr.ac.uk

Authors

Adam Mills

aut / cre

Erle Holgersen

aut

Ros Cutts

aut

Syed Haider

aut

Material

NEWS
Reference manual
Package source

Vignettes

Errors
Introduction

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

varitas archive

Imports

stringr
dplyr
yaml
openxlsx
VennDiagram
assertthat
magrittr
tools
utils
tidyr
doParallel
foreach

Suggests

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knitr
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