CRAN/E | umiAnalyzer

umiAnalyzer

Tools for Analyzing Sequencing Data with Unique Molecular Identifiers

Installation

About

Tools for analyzing sequencing data containing unique molecular identifiers generated by 'UMIErrorCorrect' ().

github.com/sfilges/umiAnalyzer
Bug report File report

Key Metrics

Version 1.0.0
R ≥ 4.1.0
Published 2021-11-25 889 days ago
Needs compilation? no
License GPL-3
CRAN checks umiAnalyzer results
Language en-US

Downloads

Yesterday 7 +133%
Last 7 days 54 +26%
Last 30 days 142 +8%
Last 90 days 354 -31%
Last 365 days 1.581 -4%

Maintainer

Maintainer

Stefan Filges

stefan.filges@gu.se

Authors

Stefan Filges

aut / cre

Gustav Johansson

ctb

Material

README
NEWS
Reference manual
Package source

Vignettes

umiAnalyzer vignette

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Depends

R ≥ 4.1.0

Imports

BiocManager
dplyr ≥ 0.7.5
DT ≥ 0.19
forcats ≥0.5.0
ggplot2 ≥ 2.2.1
graphics
grDevices
gridExtra ≥2.3
magrittr ≥ 1.5
methods
pheatmap ≥ 1.0.12
plotly ≥ 4.9.2.1
readr ≥ 1.1.1
Rsamtools ≥ 1.32.3
scales ≥ 1.1.0
shiny ≥ 1.7.1
shinydashboard ≥ 0.7.2
shinyFiles ≥ 0.9.0
shinyWidgets ≥ 0.6.2
stats
stringr ≥ 1.4.0
tibble ≥ 1.4.2
tidyr ≥ 0.8.1
utils
viridis ≥ 0.5.1

Suggests

knitr ≥ 1.27
rmarkdown ≥ 2.1