CRAN/E | twosigma

twosigma

DE Analysis for Single-Cell RNA-Sequencing Data

Installation

About

Implements the TWO-Component Single Cell Model-Based Association Method (TWO-SIGMA) for gene-level differential expression (DE) analysis and DE-based gene set testing of single-cell RNA-sequencing datasets. See Van Buren et al. (2020) doi:10.1002/gepi.22361 and Van Buren et al. (2021) doi:10.1101/2021.01.24.427979.

github.com/edvanburen/twosigma
Bug report File report

Key Metrics

Version 1.0.2
Published 2021-12-13 855 days ago
Needs compilation? no
License AGPL-3
CRAN checks twosigma results

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Maintainer

Maintainer

Eric Van Buren

edvanburen@gmail.com

Authors

Eric Van Buren

aut / cre

Yun Li

aut

Di Wu

aut

Ming Hu

aut

Material

README
NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Imports

multcomp ≥ 1.4-13
glmmTMB
methods
pscl ≥ 1.5.5
pbapply ≥ 1.4.0
parallel ≥ 3.6.3
doParallel ≥ 1.0.15

Suggests

testthat