CRAN/E | trialr

trialr

Clinical Trial Designs in 'rstan'

Installation

About

A collection of clinical trial designs and methods, implemented in 'rstan' and R, including: the Continual Reassessment Method by O'Quigley et al. (1990) doi:10.2307/2531628; EffTox by Thall & Cook (2004) doi:10.1111/j.0006-341X.2004.00218.x; the two-parameter logistic method of Neuenschwander, Branson & Sponer (2008) doi:10.1002/sim.3230; and the Augmented Binary method by Wason & Seaman (2013) doi:10.1002/sim.5867; and more. We provide functions to aid model-fitting and analysis. The 'rstan' implementations may also serve as a cookbook to anyone looking to extend or embellish these models. We hope that this package encourages the use of Bayesian methods in clinical trials. There is a preponderance of early phase trial designs because this is where Bayesian methods are used most. If there is a method you would like implemented, please get in touch.

github.com/brockk/trialr
System requirements GNU make
Bug report File report

Key Metrics

Version 0.1.6
R ≥ 3.5.0
Published 2023-03-12 405 days ago
Needs compilation? yes
License GPL (≥ 3)
CRAN checks trialr results

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Maintainer

Maintainer

Kristian Brock

kristian.brock@gmail.com

Authors

Kristian Brock

aut / cre

Trustees of Columbia University

cph

Material

README
NEWS
Reference manual
Package source

Vignettes

CRM: Continual Reassessment Method
Visualisation with CRM
Dose pathways with CRM
CRM Case Study 1 - Levy et al (2006)
Time-to-Event Continual Reassessment Method
NeuenschwanderBransonGsponer
EffTox
Hierarchical Bayesian Model for Binary Responses
BEBOP: Bayesian Evaluation of Bivariate Binary Outcomes and Predictive Information

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

trialr archive

Depends

R ≥ 3.5.0
methods
Rcpp ≥ 1.0.1

Imports

rstan ≥ 2.18.2
rstantools ≥ 1.5.1
rlang ≥ 0.4.5
dplyr
purrr
magrittr
stringr
ggplot2
gtools
coda
tidybayes ≥ 2.0.3
tibble ≥ 3.0.0
binom
MASS

Suggests

testthat
knitr
rmarkdown
tidyr
ggridges
DiagrammeR

LinkingTo

StanHeaders ≥ 2.18.1
rstan ≥ 2.18.2
BH ≥1.69.0-1
Rcpp ≥ 1.0.1
RcppEigen ≥ 0.3.3.5.0
RcppParallel ≥ 5.0.2

Reverse Imports

escalation
historicalborrowlong