CRAN/E | tramME

tramME

Transformation Models with Mixed Effects

Installation

About

Likelihood-based estimation of mixed-effects transformation models using the Template Model Builder ('TMB', Kristensen et al., 2016) doi:10.18637/jss.v070.i05. The technical details of transformation models are given in Hothorn et al. (2018) doi:10.1111/sjos.12291. Likelihood contributions of exact, randomly censored (left, right, interval) and truncated observations are supported. The random effects are assumed to be normally distributed on the scale of the transformation function, the marginal likelihood is evaluated using the Laplace approximation, and the gradients are calculated with automatic differentiation (Tamasi & Hothorn, 2021) doi:10.32614/RJ-2021-075. Penalized smooth shift terms can be defined using 'mgcv'.

Citation tramME citation info
ctm.R-forge.R-project.org

Key Metrics

Version 1.0.5
R ≥ 3.6.0
Published 2023-06-29 300 days ago
Needs compilation? yes
License GPL-2
CRAN checks tramME results

Downloads

Yesterday 3 0%
Last 7 days 72 -22%
Last 30 days 255 -23%
Last 90 days 983 -13%
Last 365 days 4.232 -9%

Maintainer

Maintainer

Balint Tamasi

balint.tamasi+tramME@gmail.com

Authors

Balint Tamasi

aut / cre

Torsten Hothorn

ctb

Material

NEWS
Reference manual
Package source

Vignettes

Examples in statistical ecology
R Journal 2021

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

tramME archive

Depends

R ≥ 3.6.0
tram ≥ 0.3.2
mlt ≥ 1.1.0

Imports

alabama
lme4 ≥ 1.1.19
Matrix
methods
mgcv ≥ 1.8.34
nlme
TMB ≥ 1.7.15
stats
variables ≥ 1.0.2
basefun ≥1.0.6
numDeriv
MASS
coneproj
mvtnorm

Suggests

multcomp
parallel
survival
knitr
coxme
ordinal
ordinalCont
gamm4
gamlss.dist
glmmTMB
xtable

LinkingTo

TMB
RcppEigen