CRAN/E | tmbstan

tmbstan

MCMC Sampling from 'TMB' Model Object using 'Stan'

Installation

About

Enables all 'rstan' functionality for a 'TMB' model object, in particular MCMC sampling and chain visualization. Sampling can be performed with or without Laplace approximation for the random effects. This is demonstrated in Monnahan & Kristensen (2018) doi:10.1371/journal.pone.0197954.

Citation tmbstan citation info
System requirements GNU make
Bug report File report

Key Metrics

Version 1.0.91
Published 2023-08-26 243 days ago
Needs compilation? yes
License GPL (≥ 3)
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Maintainer

Maintainer

Kasper Kristensen

kaskr@dtu.dk

Authors

Kasper Kristensen

Material

NEWS
Reference manual
Package source

In Views

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macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

tmbstan archive

Depends

rstan

Imports

methods
Rcpp
TMB

LinkingTo

StanHeaders
rstan
BH
Rcpp
RcppEigen
TMB
RcppParallel

Reverse Imports

hmmTMB

Reverse Suggests

SAMtool