CRAN/E | taxonomizr

taxonomizr

Functions to Work with NCBI Accessions and Taxonomy

Installation

About

Functions for assigning taxonomy to NCBI accession numbers and taxon IDs based on NCBI's accession2taxid and taxdump files. This package allows the user to download NCBI data dumps and create a local database for fast and local taxonomic assignment.

Bug report File report

Key Metrics

Version 0.10.6
R ≥ 3.0.0
Published 2023-12-15 139 days ago
Needs compilation? yes
License GPL-2
License GPL-3
License File
CRAN checks taxonomizr results

Downloads

Yesterday 36 0%
Last 7 days 160 -10%
Last 30 days 647 -1%
Last 90 days 1.994 -21%
Last 365 days 8.179 -5%

Maintainer

Maintainer

Scott Sherrill-Mix

ssm@msu.edu

Authors

Scott Sherrill-Mix

aut / cre

Material

README
Reference manual
Package source

Vignettes

taxonomizr usage

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

taxonomizr archive

Depends

R ≥ 3.0.0

Imports

RSQLite
R.utils
data.table
curl ≥ 5.0.0

Suggests

testthat
knitr
rmarkdown