CRAN/E | symphony

symphony

Efficient and Precise Single-Cell Reference Atlas Mapping

Installation

About

Implements the Symphony single-cell reference building and query mapping algorithms and additional functions described in Kang et al .

Key Metrics

Version	0.1.0
R	≥ 2.10
Published	2021-08-05 995 days ago
Needs compilation?	yes
License	GPL (≥ 3)
CRAN checks	symphony results

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Maintainer

Maintainer

Joyce Kang

joyce_kang@hms.harvard.edu

Authors

Joyce Kang	aut / cre
Ilya Korsunsky	aut
Soumya Raychaudhuri	aut

Material

README
Reference manual
Package source

Vignettes

Quickstart PBMCs Tutorial

macOS

r-release	arm64
r-oldrel	arm64
r-release	x86_64
r-oldrel	x86_64

Windows

r-devel	x86_64
r-release	x86_64
r-oldrel	x86_64

Depends

R

≥ 2.10

Imports

methods
Rcpp
harmony
uwot
irlba
class
purrr
dplyr
ggplot2
stats
utils
magrittr
data.table
tibble
Matrix
tidyr
rlang
RColorBrewer
ggrastr
ggrepel
RANN

Suggests

knitr
rmarkdown
testthat
ggthemes

LinkingTo

Rcpp
RcppArmadillo