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Fitting Hansen Models to Investigate Convergent Evolution

Installation

About

This data-driven phylogenetic comparative method fits stabilizing selection models to continuous trait data, building on the 'ouch' methodology of Butler and King (2004) doi:10.1086/426002. The main functions fit a series of Hansen models using stepwise AIC, then identify cases of convergent evolution where multiple lineages have shifted to the same adaptive peak. For more information see Ingram and Mahler (2013) doi:10.1111/2041-210X.12034.

Citation surface citation info
www.otago.ac.nz/ecoevotago/code/surface.html

Key Metrics

Version 0.5
R ≥ 2.6
Published 2020-12-18 1224 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks surface results

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Maintainer

Maintainer

Travis Ingram

travis.ingram@otago.ac.nz

Authors

Travis Ingram

Material

Reference manual
Package source

Vignettes

Introduction to surface

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

surface archive

Depends

R ≥ 2.6
ape
ouch
MASS
geiger

Imports

methods

Suggests

igraph