CRAN/E | spaMM

spaMM

Mixed-Effect Models, with or without Spatial Random Effects

Installation

About

Inference based on models with or without spatially-correlated random effects, multivariate responses, or non-Gaussian random effects (e.g., Beta). Variation in residual variance (heteroscedasticity) can itself be represented by a mixed-effect model. Both classical geostatistical models (Rousset and Ferdy 2014 doi:10.1111/ecog.00566), and Markov random field models on irregular grids (as considered in the 'INLA' package, ), can be fitted, with distinct computational procedures exploiting the sparse matrix representations for the latter case and other autoregressive models. Laplace approximations are used for likelihood or restricted likelihood. Penalized quasi-likelihood and other variants discussed in the h-likelihood literature (Lee and Nelder 2001 doi:10.1093/biomet/88.4.987) are also implemented.

Citation spaMM citation info
www.r-project.org
gitlab.mbb.univ-montp2.fr/francois/spamm-ref
System requirements GNU Scientific Library (GSL)

Key Metrics

Version 4.4.16
R ≥ 3.5.0
Published 2023-12-20 121 days ago
Needs compilation? yes
License CeCILL-2
CRAN checks spaMM results

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Maintainer

Maintainer

François Rousset

francois.rousset@umontpellier.fr

Authors

François Rousset

aut / cre / cph

Jean-Baptiste Ferdy

aut / cph

Alexandre Courtiol

aut

Material

NEWS
Reference manual
Package source

In Views

MixedModels
Spatial

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

spaMM archive

Depends

R ≥ 3.5.0

Imports

methods
stats
graphics
Matrix
MASS
proxy
Rcpp ≥0.12.10
nlme
nloptr
minqa
pbapply
crayon
gmp ≥ 0.6.0
ROI
boot
geometry ≥ 0.4.0
numDeriv
backports

Suggests

maps
testthat
rcdd
foreach
future
future.apply
Infusion ≥ 1.3.0
IsoriX ≥ 0.8.1
blackbox ≥ 1.1.25
RSpectra
ROI.plugin.glpk
lme4
rsae
multilevel
agridat

Enhances

multcomp
RLRsim
lmerTest

LinkingTo

Rcpp
RcppEigen ≥ 0.3.3.5.0

Reverse Imports

blackbox
Infusion
IsoriX
NCC

Reverse Suggests

DHARMa