CRAN/E | shinySIR

shinySIR

Interactive Plotting for Mathematical Models of Infectious Disease Spread

Installation

About

Provides interactive plotting for mathematical models of infectious disease spread. Users can choose from a variety of common built-in ordinary differential equation (ODE) models (such as the SIR, SIRS, and SIS models), or create their own. This latter flexibility allows 'shinySIR' to be applied to simple ODEs from any discipline. The package is a useful teaching tool as students can visualize how changing different parameters can impact model dynamics, with minimal knowledge of coding in R. The built-in models are inspired by those featured in Keeling and Rohani (2008) doi:10.2307/j.ctvcm4gk0 and Bjornstad (2018) doi:10.1007/978-3-319-97487-3.

Citation shinySIR citation info

Key Metrics

Version 0.1.2
Published 2020-10-18 1285 days ago
Needs compilation? no
License MIT
License File
CRAN checks shinySIR results

Downloads

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Last 7 days 120 +62%
Last 30 days 281 -19%
Last 90 days 802 -7%
Last 365 days 3.012 -26%

Maintainer

Maintainer

Sinead E. Morris

sinead.morris@columbia.edu

Authors

Sinead E. Morris

aut / cre

Ottar N. Bjornstad

ctb

Material

NEWS
Reference manual
Package source

Vignettes

Vignette

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

shinySIR archive

Depends

dplyr ≥ 0.8.0.1
tidyr ≥ 0.8.3
ggplot2 ≥ 3.1.1
shiny ≥ 1.3.2
deSolve ≥ 1.2.1

Suggests

knitr ≥ 1.22
rmarkdown ≥ 1.12
testthat ≥ 2.2.0