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sequoia

Pedigree Inference from SNPs

Installation

About

Multi-generational pedigree inference from incomplete data on hundreds of SNPs, including parentage assignment and sibship clustering. See Huisman (2017) (doi:10.1111/1755-0998.12665) for more information.

Citation sequoia citation info
jiscah.github.io/

Key Metrics

Version 2.9.0
R ≥ 3.5.0
Published 2024-03-01 63 days ago
Needs compilation? yes
License GPL-2
CRAN checks sequoia results

Downloads

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Maintainer

Maintainer

Jisca Huisman

jisca.huisman@gmail.com

Authors

Jisca Huisman

aut / cre

Material

NEWS
Reference manual
Package source

Vignettes

PedCompare Example (Griffin Pedigree)
Quick start example 1: Simulated data
Sequoia - Age 'Prior'
Sequoia User Guide
Sequoia flowchart
Mitochondrial haplotypes

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

sequoia archive

Depends

R ≥ 3.5.0

Imports

plyr ≥ 1.8.0
stats
utils
graphics

Suggests

openxlsx
knitr
rmarkdown
bookdown
kinship2
R.rsp
hexbin
data.table